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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataactagttgttgaaaccttgtttaaatcgtcctctgactgatgattactaatttgggtgatagttactaaatgaataccttgtttctgcagCATTCTCATCAGGGGAATAGTGTGTAGCAAGAACATTACGCACAAGCGAATGATATCGCAGTACAAAAATCCAAGGGTGATGCTTTTAGCTGGTTCTCTT

Basic information

species Arabidopsis thaliana
transcript AT1G71010.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124921151|gb|EH994796.1|EH994796
EST:     AAAATAAAATGTGTAGCATCTGGAAATCAAAATGAGAG                         CATTCTCATCAGGGGAATAGTGTGTAGCAAGAACATTACGCACAAGCGAAT
genomic: AAAATAAAATGTGTAGCATCTGGAAATCAAAATGAGAGgtataactag ... gtttctgcagCATTCTCATCAGGGGAATAGTGTGTAGCAAGAACATTACGCACAAGCGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgatgattactaatttgggtgatagttactaaatgaataccttgtttctgcagCATTCTCATCAGGGGAATAGTGTGTAGCAAGAACATTACGCACAAGCGAATGATATCGCAGTACAAAAATCCAAGGGTGATGCTTTTAGCTGGTTCTCTT
                            tactaaa  putative branch site (score: 1)
                                         ccttgtttct  putative PPT
                           ttactaaatgaata  TA-rich tract