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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCGCCTTCTTCTCTTGCTACCGAAAGCGAGAGTCTTGCCTCGAGTCTTGAAATCCGTGATTGTAGGAACATGGCTTCTATTCGTTGCTATCCTAGCAGgtaaagtttcgatttttacattcaattatgtgtgaaaaagattcaatttttatgttcaattatgagtctttaaacatgttggagtaagtgaatgatttgtgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G71010.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116446470|gb|EG489062.1|EG489062
EST:     GAAATCCGTGATTGTAGGAACATGGCTTCTATTCGTTGCTATCCTAGCAG                         GGGAGAGGAAGAAGAGGCTAGATATTGTGGTAAACAGTTGTTAAGCCCTTC
genomic: GAAATCCGTGATTGTAGGAACATGGCTTCTATTCGTTGCTATCCTAGCAGgtaaagtttc ... gtgtttgcagGGGAGAGGAAGAAGAGGCTAGATATTGTGGTAAACAGTTGTTAAGCCCTTC
EST: gi|116439305|gb|EG481897.1|EG481897
EST:     GAAATCCGTGATTGTAGGAACATGGCTTCTATTCGTTGCTATCCTAGCAG                         GGGAGAGGAAGAAGAGGCTAGATATTGTGGTAAACAGTTGTTAAGCCCTTC
genomic: GAAATCCGTGATTGTAGGAACATGGCTTCTATTCGTTGCTATCCTAGCAGgtaaagtttc ... gtgtttgcagGGGAGAGGAAGAAGAGGCTAGATATTGTGGTAAACAGTTGTTAAGCCCTTC
EST: gi|116381281|gb|EG423873.1|EG423873
EST:     GAAATCCGTGATTGTAGGAACATGGCTTCTATTCGTTGCTATCCTAGCAG                         GGGAGAGGAAGAAGAGGCTAGATATTGTGGTAAACAGTTGTTAAGCCCTTC
genomic: GAAATCCGTGATTGTAGGAACATGGCTTCTATTCGTTGCTATCCTAGCAGgtaaagtttc ... gtgtttgcagGGGAGAGGAAGAAGAGGCTAGATATTGTGGTAAACAGTTGTTAAGCCCTTC
EST: gi|125127191|gb|EL172165.1|EL172165
EST:     CTATTCGTTGCTATCCTAGCAG                         GGGAGAGGAAGAAGAGGCTAGATATTGTGGTAAACAGTTGTTAAGCCCTTC
genomic: CTATTCGTTGCTATCCTAGCAGgtaaagtttc ... gtgtttgcagGGGAGAGGAAGAAGAGGCTAGATATTGTGGTAAACAGTTGTTAAGCCCTTC
EST: gi|125279567|gb|EL293652.1|EL293652
EST:     GAAATCCGTGATTGTAGGAACATGGCTTCTATTCGTTGCTATCCTAGCAG                         GGGAGAGGAAGAAGAGGCTAGATATTGTGGCAAACAGTTGTTAAGCCCTTC
genomic: GAAATCCGTGATTGTAGGAACATGGCTTCTATTCGTTGCTATCCTAGCAGgtaaagtttc ... gtgtttgcagGGGAGAGGAAGAAGAGGCTAGATATTGTGGTAAACAGTTGTTAAGCCCTTC