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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgtgttactgtttctttatgatggctgcataaaatctctgattaacaaactgaacaactgaattatgtgtgttggacagGAAAATGAACATATGAAGGCGATAATAGCAAAAATAGAGTCCCTTCGTCCTAATGTTCTGCTGGTAGAGAAAAGTGCATCTTCATATGCCCAGCAATACC

Basic information

species Arabidopsis thaliana
transcript AT1G71010.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71010.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv01s0011g04790.t01 (Vitis vinifera), 3'ss of exon 3
gttggtgtgttactgtttctttatgatggctgcataaaatctctgatta--acaaactgaacaactgaattatg--tgtgttggacagGAAAATGAACATATGAAGGCGATAATAGCAAAAATAGAGTCCCTTCGTCCTAATGTTCTGCTGGTAGAGAAAAGTGCATCTTCATATGCCCAGCAATACC
||   |   ||  ||  | | || | ||  |   |  |      ||| |  | ||    ||    |   || |   | | ||  ||||||||  || ||| | | |  |||  |  |||| |||||| | | |||  | |||||||| |||||||| ||||||| |||||||||||| ||  |||| |
gtc--tcctttcttgactttctaagttgcttattttcacataaggataagaataattgaaatggtttttttttaattctttttaacagGAAATGGATCATCTCAGGATGATTGTTTCAAAGATAGAGGCTCATCGCACAAATGTTCTTCTGGTAGAAAAAAGTGTATCTTCATATGCGCAAGAATATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcataaaatctctgattaacaaactgaacaactgaattatgtgtgttggacagGAAAATGAACATATGAAGGCGATAATAGCAAAAATAGAGTCCCTTCGTCCTAATGTTCTGCTGGTAGAGAAAAGTGCATCTTCATATGCCCAGCAATACC
               gattaac  putative branch site (score: 2)
                attaacaaa  TA-rich tract