1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCGATAATTGATGCGGCTTCATATGTTCCACCTCCACCATCAGAAGAACAAAAGAAGAAAATAGTAAAGCTgtgagaaccaaccaaatcaaatccttttccatgattccattgttttaactctgaatccaaatcttgacgcggtgaattcttacattttcag
species | Arabidopsis thaliana |
transcript | AT1G62850.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGAAAATAGTAAAGCT CGCTGCGAAAGCTGACAATAAACGACTTAAAAGCAAAAAAGTTCTGTCAGAEST: gi|86079506|gb|DR375263.1|DR375263
genomic: AAGAAAATAGTAAAGCTgtgagaacca ... acattttcagCGCTGCGAAAGCTGACAATAAACGACTTAAAAGCAAAAAAGTTCTGTCAGA
EST: TATGTTCCACCTCCACCATCAGAAGAACAGAAGAAGAAAATAGTAAAGCT GGCTGCGAAAGCTGACAATAAACGACTTAAAAGCAAAAAAGTTCTGTCAGAEST: gi|19741759|gb|AU227112.1|AU227112
genomic: TATGTTCCACCTCCACCATCAGAAGAACAAAAGAAGAAAATAGTAAAGCTgtgagaacca ... acattttcagCGCTGCGAAAGCTGACAATAAACGACTTAAAAGCAAAAAAGTTCTGTCAGA
EST: TATGTTCCACCTCCACCATCAGAAGAACAAAAGAAGAAAATAGTAAAGCT CGCTGCGAAAGCTGACAATAAACGACTTAAAAGCAAAAAAGTTCTGTCAGAEST: gi|86074747|gb|DR370504.1|DR370504
genomic: TATGTTCCACCTCCACCATCAGAAGAACAAAAGAAGAAAATAGTAAAGCTgtgagaacca ... acattttcagCGCTGCGAAAGCTGACAATAAACGACTTAAAAGCAAAAAAGTTCTGTCAGA
EST: TATGTTCCACCTCCACCATCAGAAGAACAGAAGAAGAAAATAGTAAAGCT GGCTGCGAAAGCTGACAATAAACGACTTAAAAGCAAAAAAGTTCTGTCAGA
genomic: TATGTTCCACCTCCACCATCAGAAGAACAAAAGAAGAAAATAGTAAAGCTgtgagaacca ... acattttcagCGCTGCGAAAGCTGACAATAAACGACTTAAAAGCAAAAAAGTTCTGTCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGATAATTGATGCGGCTTCATATGTTCCACCTCCACCATCAGAAGAACAAAAGAAGAAAATAGTAAAGCTgtgagaaccaaccaaatcaaatccttttccatgattccattgttttaactctgaatccaaatcttgacgcggtgaattcttacattttcag
- - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA