Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaacctaatagtcctctctttcatattccattctcaataacttctctatttatgacagtatgttcccttgcagAGGTAACATCGACGATGCACTTGAAAAACTACAG

Basic information

species Arabidopsis thaliana
transcript AT1G62850.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079506|gb|DR375263.1|DR375263
EST:     AACAAGGATGGTGAACTTGTGATATCTTCAACCAAAACCAGAACGCAGAA                         AGGCAACATCGACGATGCACTTGAAAAACTACAG
genomic: AACAAGGATGGTGAACTTGTGATATCTTCTACCAAAACCAGAACGCAGAAgtcagtaacc ... tcccttgcagAGGTAACATCGACGATGCACTTGAAAAACTACAG
EST: gi|19741759|gb|AU227112.1|AU227112
EST:     AACAAGGATGGTGAACTTGTGATATCTTCTACCAAAACCAGAACGCAGAA                         AGGTAACATCGACGATGCACTTGAAAAACTACAG
genomic: AACAAGGATGGTGAACTTGTGATATCTTCTACCAAAACCAGAACGCAGAAgtcagtaacc ... tcccttgcagAGGTAACATCGACGATGCACTTGAAAAACTACAG
EST: gi|86074747|gb|DR370504.1|DR370504
EST:     AACAAGGATGGTGAACTTGTGATATCTTCAACCAAAACCAGAACGCAGAA                         AGGCAACATCGACGATGCACTTGAAAAACTACAG
genomic: AACAAGGATGGTGAACTTGTGATATCTTCTACCAAAACCAGAACGCAGAAgtcagtaacc ... tcccttgcagAGGTAACATCGACGATGCACTTGAAAAACTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatattccattctcaataacttctctatttatgacagtatgttcccttgcagAGGTAACATCGACGATGCACTTGAAAAACTACAG
                caataac  putative branch site (score: 2)
                                          tgttccctt  putative PPT
                          tctatttat  TA-rich tract