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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTAACATCGACGATGCACTTGAAAAACTACAGgtaatatattgaatatcacgtcttttcgtcatggtgtgtttcattctatctaaaacggagatgtttttgtttaatcacataactgaacag

Basic information

species Arabidopsis thaliana
transcript AT1G62850.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079506|gb|DR375263.1|DR375263
EST:     AGGCAACATCGACGATGCACTTGAAAAACTACAG                         GCGATCATTGATGCGGCTTCTTATGTTCCACCTCCACCATCAGAAGAACAG
genomic: AGGTAACATCGACGATGCACTTGAAAAACTACAGgtaatatatt ... aactgaacagGCGATAATTGATGCGGCTTCATATGTTCCACCTCCACCATCAGAAGAACAA
EST: gi|19741759|gb|AU227112.1|AU227112
EST:     AGGTAACATCGACGATGCACTTGAAAAACTACAG                         GCGATAATTGATGCGGCTTCATATGTTCCACCTCCACCATCAGAAGAACAA
genomic: AGGTAACATCGACGATGCACTTGAAAAACTACAGgtaatatatt ... aactgaacagGCGATAATTGATGCGGCTTCATATGTTCCACCTCCACCATCAGAAGAACAA
EST: gi|86074747|gb|DR370504.1|DR370504
EST:     AGGCAACATCGACGATGCACTTGAAAAACTACAG                         GCGATCATTGATGCGGCTTCTTATGTTCCACCTCCACCATCAGAAGAACAG
genomic: AGGTAACATCGACGATGCACTTGAAAAACTACAGgtaatatatt ... aactgaacagGCGATAATTGATGCGGCTTCATATGTTCCACCTCCACCATCAGAAGAACAA