1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgactcttgatctggttggggccaaaatttaggataatagagtatttggctttttgtttctatgcgttgtgtagttagcttttttgttgtttgtcaacagGAGAAGAATCGGATCAACAAGGATGGTGAACTTGTGATATCTTCTACCAAAACCAGAACGCAGAA
species | Arabidopsis thaliana |
transcript | AT1G62850.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACGCGTATTGGCTGAGTGACAGGWTCAGAGAGAAAATCTTACTGACG GAGAAGAATCGGATCAACAAGGATGGTGAACTTGTGATATCTTCAACCAAAEST: gi|19741759|gb|AU227112.1|AU227112
genomic: AACGCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACGgtttgttttt ... ttgtcaacagGAGAAGAATCGGATCAACAAGGATGGTGAACTTGTGATATCTTCTACCAAA
EST: CAGAGAGAAAATCTTACTGACG GAGAAGAATCGGATCAACAAGGATGGTGAACTTGTGATATCTTCTACCAAAEST: gi|86074747|gb|DR370504.1|DR370504
genomic: CAGAGAGAAAATCTTACTGACGgtttgttttt ... ttgtcaacagGAGAAGAATCGGATCAACAAGGATGGTGAACTTGTGATATCTTCTACCAAA
EST: AGAACGCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACG GAGAAGAATCGGATCAACAAGGATGGTGAACTTGTGATATCTTCAACCAAAEST: gi|125171148|gb|EL194200.1|EL194200
genomic: AGAACGCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACGgtttgttttt ... ttgtcaacagGAGAAGAATCGGATCAACAAGGATGGTGAACTTGTGATATCTTCTACCAAA
EST: AACGTCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACG GAGAAGAATCGGATCAACAAGGAATGGTGAACTTGTGATATCTTCTACCAA
genomic: AACG-CGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACGgtttgttttt ... ttgtcaacagGAGAAGAATCGGATCAACAAGGA-TGGTGAACTTGTGATATCTTCTACCAA
ttggctttttgtttctatgcgttgtgtagttagcttttttgttgtttgtcaacagGAGAAGAATCGGATCAACAAGGATGGTGAACTTGTGATATCTTCTACCAAAACCAGAACGCAGAA
cttttttgttgttt CT-rich tract
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgactcttgatctggttggggccaaaatttaggataatagagtatttggctttttgtttctatgcgttgtgtagttagcttttttgttgtttgtcaacagGAGAAGAATCGGATCAACAAGGATGGTGAACTTGTGATATCTTCTACCAAAACCAGAACGCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - -ggttggg
- - - - - - - - - - -ccaaaat
- - - - - - - - - - - - - - - - - - - - - tatttgg