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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAAAGATACAGAGTGAAAACCAGAATAACACTACAGTGACTGATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAGgttagggtttagcttttgttgcgttgctctttaagtttagatttggattctaattaatgaaagtaataaagagattcctgcaaagtagttttttgtaaacttaattaaggtgaatttttgtctttgctgtgtgtgtttag

Basic information

species Arabidopsis thaliana
transcript AT1G52410.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125097424|gb|EL153891.1|EL153891
EST:     CAGTGACTGATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAG                         GTTGGATCTGT
genomic: CAGTGACTGATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAGgttagggttt ... gtgtgtttagGTTGGATCTGT
EST: gi|164149871|gb|ES044041.1|ES044041
EST:     ATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAG                         GTTGGATCCGTTAGTGATGAAAGCGTT
genomic: ATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAGgttagggttt ... gtgtgtttagGTTGGATCTGTTAGTGATGAAAGCGTT
EST: gi|164173475|gb|EL999813.1|EL999813
EST:     TTTCTCTATCTCTATCAGATGAATCTGAG                         GTTGGGATCTGTTAGTGATGAAAGCGTTGGACGTTCGAGTCTGTTGGATCA
genomic: TTTCTCTATCTCTATCAGATGAATCTGAGgttagggttt ... gtgtgtttagGTT-GGATCTGTTAGTGATGAAAGCGTTGGACGTTCGAGTCTGTTGGATCA
EST: gi|164054761|gb|ES010996.1|ES010996
EST:     CAGTGACTGATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAG                         GTTGGATCTGTTAG
genomic: CAGTGACTGATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAGgttagggttt ... gtgtgtttagGTTGGATCTGTTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCAAAGATACAGAGTGAAAACCAGAATAACACTACAGTGACTGATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAGgttagggtttagcttttgttgcgttgctctttaagtttagatttggattctaattaatgaaagtaataaagagattcctgcaaagtagttttttgtaaacttaattaaggtgaatttttgtctttgctgtgtgtgtttag

- - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG