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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagggtttagcttttgttgcgttgctctttaagtttagatttggattctaattaatgaaagtaataaagagattcctgcaaagtagttttttgtaaacttaattaaggtgaatttttgtctttgctgtgtgtgtttagGTTGGATCTGTTAGTGATGAAAGCGTTGGACGTTCGAGTCTGTTGGATCAAATCAAACTTGAATTCGAAG

Basic information

species Arabidopsis thaliana
transcript AT1G52410.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125097424|gb|EL153891.1|EL153891
EST:     CAGTGACTGATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAG                         GTTGGATCTGT
genomic: CAGTGACTGATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAGgttagggttt ... gtgtgtttagGTTGGATCTGT
EST: gi|164149871|gb|ES044041.1|ES044041
EST:     ATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAG                         GTTGGATCCGTTAGTGATGAAAGCGTT
genomic: ATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAGgttagggttt ... gtgtgtttagGTTGGATCTGTTAGTGATGAAAGCGTT
EST: gi|164173475|gb|EL999813.1|EL999813
EST:     TTTCTCTATCTCTATCAGATGAATCTGAG                         GTTGGGATCTGTTAGTGATGAAAGCGTTGGACGTTCGAGTCTGTTGGATCA
genomic: TTTCTCTATCTCTATCAGATGAATCTGAGgttagggttt ... gtgtgtttagGTT-GGATCTGTTAGTGATGAAAGCGTTGGACGTTCGAGTCTGTTGGATCA
EST: gi|164054761|gb|ES010996.1|ES010996
EST:     CAGTGACTGATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAG                         GTTGGATCTGTTAG
genomic: CAGTGACTGATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAGgttagggttt ... gtgtgtttagGTTGGATCTGTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttttttgtaaacttaattaaggtgaatttttgtctttgctgtgtgtgtttagGTTGGATCTGTTAGTGATGAAAGCGTTGGACGTTCGAGTCTGTTGGATCAAATCAAACTTGAATTCGAAG
             acttaat  putative branch site (score: 4)
     ttttgtaaacttaatt  TA-rich tract