1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gtttttgttttaaaccttttcttgaacagcaagaaagtgatcagaatcacaatctctaaagtctaattcctatgttttcatgatttttcagGGAACAGAGACTTCTAGTCTCACCGCGTCTTTGACTCAACTCGTTGAGAATCACAGGAAAGAAAAGGAATCTCTACTCGGACACAGAGTTCTCACTTCTC
species | Arabidopsis thaliana |
transcript | AT1G52410.1 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: CAACAAAATNTAGCATAGAAGATATCCTCTCTGAAGAATCTGCAGTCCAG GGAACAGAGACTTCTAGTCTCACCGCGTCTTTEST: gi|164004815|gb|ES065601.1|ES065601
genomic: CAACAAAATATAGCATAGAAGATATCCTCTCTGAAGAATCTGCAGTCCAGgtttttgttt ... gatttttcagGGAACAGAGACTTCTAGTCTCACCGCGTCTTT
EST: GAAGAATCTGTCAGTCCAG GGAACAGAGACTTCTAGTCTCACCGCGTCTTTGACTCAACTCGTTGAGAAEST: gi|164201275|gb|ES045854.1|ES045854
genomic: GAAGAATCTG-CAGTCCAGgtttttgttt ... gatttttcagGGAACAGAGACTTCTAGTCTCACCGCGTCTTTGACTCAACTCGTTGAGAA
EST: CCTCTCTGAAGAATCTGCAGTCCAG GGAACAGAGACTTCTAGTCTCACCGCGTCTTTGACTCAACTCGTTGAGAAT
genomic: CCTCTCTGAAGAATCTGCAGTCCAGgtttttgttt ... gatttttcagGGAACAGAGACTTCTAGTCTCACCGCGTCTTTGACTCAACTCGTTGAGAAT
gtgatcagaatcacaatctctaaagtctaattcctatgttttcatgatttttcagGGAACAGAGACTTCTAGTCTCACCGCGTCTTTGACTCAACTCGTTGAGAATCACAGGAAAGAAAAGGAATCTCTACTCGGACACAGAGTTCTCACTTCTC
gtctaat putative branch site (score: 3)
tttttc putative PPT
ttttcatgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttgttttaaaccttttcttgaacagcaagaaagtgatcagaatcacaatctctaaagtctaattcctatgttttcatgatttttcagGGAACAGAGACTTCTAGTCTCACCGCGTCTTTGACTCAACTCGTTGAGAATCACAGGAAAGAAAAGGAATCTCTACTCGGACACAGAGTTCTCACTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA