1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattgtatcccaaatacacttttaaacgagattatagatatttatatttcttgcaagagattcataatttaattgactcactaatctttaaaaactttgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAGTGATGGATGAAGGAGAGATGA
species | Arabidopsis thaliana |
transcript | AT1G52200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATG CCGTTTTGGCCACAATTGTACCTTGTGTAACATTTGGACAAAEST: gi|125241618|gb|EL255703.1|EL255703
genomic: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAA
EST: ACCAAGCCAATG CCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAGEST: gi|19874528|gb|AU235359.1|AU235359
genomic: ACCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAG
EST: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATG CCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAGEST: gi|125240526|gb|EL254611.1|EL254611
genomic: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAG
EST: CATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATG CCGTTTTGACCACAATTGTAEST: gi|116416370|gb|EG458962.1|EG458962
genomic: CATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTA
EST: GAGGCCATGGAGCACTGGCTTGTTTGATTGTCAAGCAGACCAAGCCAATG CCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAGEST: gi|86076824|gb|DR372581.1|DR372581
genomic: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAG
EST: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATG CCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAGEST: gi|301501054|gb|HO206594.1|HO206594
genomic: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAG
EST: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATG CCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAGEST: gi|124739026|gb|EH830188.1|EH830188
genomic: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAG
EST: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATG CCGTTTTGACCACAATTGTACCTTGTGTAACEST: gi|124828649|gb|EH913485.1|EH913485
genomic: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAAC
EST: CCAAGCCAATG CCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAGEST: gi|124841612|gb|EH926049.1|EH926049
genomic: CCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAG
EST: ACCAAGCCAATG CCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAGEST: gi|124797112|gb|EH886791.1|EH886791
genomic: ACCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAG
EST: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATG CCGTTTTGACCACAATTGTACCTTGTGTAACATTT
genomic: GAGGCCATGGAGCACTGGTTTGTTTGATTGTCAAGCAGACCAAGCCAATGgtattgtatc ... tgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTT
gcaagagattcataatttaattgactcactaatctttaaaaactttgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAGTGATGGATGAAGGAGAGATGA
cactaat putative branch site (score: 2)
ctttgtt putative PPT
agattcataatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtatcccaaatacacttttaaacgagattatagatatttatatttcttgcaagagattcataatttaattgactcactaatctttaaaaactttgttgtgcagCCGTTTTGACCACAATTGTACCTTGTGTAACATTTGGACAAATAGCAGAAGTGATGGATGAAGGAGAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG