1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCTTATTTCTTGGGGGGTTATGCGGAGGAAGGACGAGGAATGAAGGGAAAGTCTAAAGCTGTGGTTGCAGCTGCGAAATCTTGGATTGTCGGAACTCCGgtaaggcgacatttaccaatctttttgacattgtaggtttagggtgttggtatctctactaaactgtttaaagcttgttcctttcgttacag
species | Arabidopsis thaliana |
transcript | AT1G44920.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTCTAAAGCTGTGGTTGCAGCTGCGAAATCTTGGATTGTCGGAACTCCG CTTGGAATTATCATTAGGTCEST: gi|125134829|gb|EL175489.1|EL175489
genomic: AGTCTAAAGCTGTGGTTGCAGCTGCGAAATCTTGGATTGTCGGAACTCCGgtaaggcgac ... ttcgttacagCTTGGAATTATCATTAGGTC
EST: TCGGAACTCCG CTTGGAATTATCATTAGGTCAGCTTCATCAGGTCACATTCCGGCATATAGCEST: gi|124940954|gb|EL017355.1|EL017355
genomic: TCGGAACTCCGgtaaggcgac ... ttcgttacagCTTGGAATTATCATTAGGTCAGCTTCATCAGGTCACATTCCGGCATATAGC
EST: CTAAAGCTGTGGTTGCAGCTGCGAAATCTTGGATTGTCGGAACTCCG CTTGGAATTATCATTAGGTCAGCTTACATCAGGTCACATTCCGGCATATA
genomic: CTAAAGCTGTGGTTGCAGCTGCGAAATCTTGGATTGTCGGAACTCCGgtaaggcgac ... ttcgttacagCTTGGAATTATCATTAGGTCAGCTT-CATCAGGTCACATTCCGGCATATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTATTTCTTGGGGGGTTATGCGGAGGAAGGACGAGGAATGAAGGGAAAGTCTAAAGCTGTGGTTGCAGCTGCGAAATCTTGGATTGTCGGAACTCCGgtaaggcgacatttaccaatctttttgacattgtaggtttagggtgttggtatctctactaaactgtttaaagcttgttcctttcgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC