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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAGCTCTGCTTATCTTCTCTGCCATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTCTTGATACTCTCCACACAGCTGACCCTTTCATTGCGGgtattgattcgttttcgttactctgttatctatcttgcgtttgagaagctttgtttcaagtaaaaatggaaactttatgtggcag

Basic information

species Arabidopsis thaliana
transcript AT1G44920.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125034158|gb|EL106427.1|EL106427
EST:     CTGACCCTTTCATTGCGG                         GATGGTTTCTGAGTGCTTATTTCTTGGGGGGTTATGCGGAGGAAGGACGAG
genomic: CTGACCCTTTCATTGCGGgtattgattc ... tatgtggcagGATGGTTTCTGAGTGCTTATTTCTTGGGGGGTTATGCGGAGGAAGGACGAG
EST: gi|124931890|gb|EL009205.1|EL009205
EST:     CCTGTTTTTTCTTCTTGATACTCTTCACACAGCTGACCCTTTCATTGCGG                         GATGGTTTCTGAGTGCTTATTTCTTGGGGGGTTATGCGGAGGAAGGACG
genomic: CCTGTTTTTTC-TCTTGATACTCTCCACACAGCTGACCCTTTCATTGCGGgtattgattc ... tatgtggcagGATGGTTTCTGAGTGCTTATTTCTTGGGGGGTTATGCGGAGGAAGGACG
EST: gi|124925909|gb|EL003832.1|EL003832
EST:     CCCTGTTTTTTCTCTTGATACTCTCCACACAGCTGACCCTTTCATTGCGG                         GATGGTTTCTGAGTGCTT
genomic: CCCTGTTTTTTCTCTTGATACTCTCCACACAGCTGACCCTTTCATTGCGGgtattgattc ... tatgtggcagGATGGTTTCTGAGTGCTT
EST: gi|124729007|gb|EH820409.1|EH820409
EST:     TTGATACTCTCCACACAGCTGACCCTTTCATTGCGG                         GATGGTTTCTGAGTGCTTATTTCTTGGGGGGTTATGCGGAGGAAGGACGAG
genomic: TTGATACTCTCCACACAGCTGACCCTTTCATTGCGGgtattgattc ... tatgtggcagGATGGTTTCTGAGTGCTTATTTCTTGGGGGGTTATGCGGAGGAAGGACGAG
EST: gi|125107863|gb|EL161011.1|EL161011
EST:     CCCTGTTTTTTCTCTTGATACTCTCCACACAGCTGACCCTTTCATTGCGG                         GATGGTTTCTGAGTGCTTATTTCTT
genomic: CCCTGTTTTTTCTCTTGATACTCTCCACACAGCTGACCCTTTCATTGCGGgtattgattc ... tatgtggcagGATGGTTTCTGAGTGCTTATTTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTAGCTCTGCTTATCTTCTCTGCCATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTCTTGATACTCTCCACACAGCTGACCCTTTCATTGCGGgtattgattcgttttcgttactctgttatctatcttgcgtttgagaagctttgtttcaagtaaaaatggaaactttatgtggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA