Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAACAGTTTTCGTGGGTCAAGATAATGTTCCTCTCGAGGGCGTGATTCAATTCGATAAACCGTCATCTACTTCATCTTCTAACATTACCAAATGGGGgtaattaaaaactctaactttactttgttttagtctctctagaggaaggattgcttttgtattgttatctcaaatgttttgtgttgtttctttcag

Basic information

species Arabidopsis thaliana
transcript AT1G44920.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125286081|gb|EL300166.1|EL300166
EST:     TAAACCGTCATCTACTTCATCTTCTAACATTACCAAATGGGG                         TCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC
genomic: TAAACCGTCATCTACTTCATCTTCTAACATTACCAAATGGGGgtaattaaaa ... tttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC
EST: gi|125203565|gb|EL218519.1|EL218519
EST:     CATCTACTTCATCTTCTAACATTACCAAATGGGG                         TCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC
genomic: CATCTACTTCATCTTCTAACATTACCAAATGGGGgtaattaaaa ... tttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC
EST: gi|124734212|gb|EH825614.1|EH825614
EST:     CAATTCGATAAACCGTCATCTACTTCATCTTCTAACATTACCAAATGGGG                         TCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCT
genomic: CAATTCGATAAACCGTCATCTACTTCATCTTCTAACATTACCAAATGGGGgtaattaaaa ... tttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCT
EST: gi|124887162|gb|EH966064.1|EH966064
EST:     TCTTCTAACATTACCAAATGGGG                         TCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC
genomic: TCTTCTAACATTACCAAATGGGGgtaattaaaa ... tttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC