Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaaaaactctaactttactttgttttagtctctctagaggaaggattgcttttgtattgttatctcaaatgttttgtgttgtttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTCTGCCATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTCTTGATACT

Basic information

species Arabidopsis thaliana
transcript AT1G44920.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125286081|gb|EL300166.1|EL300166
EST:     TAAACCGTCATCTACTTCATCTTCTAACATTACCAAATGGGG                         TCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC
genomic: TAAACCGTCATCTACTTCATCTTCTAACATTACCAAATGGGGgtaattaaaa ... tttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC
EST: gi|125203565|gb|EL218519.1|EL218519
EST:     CATCTACTTCATCTTCTAACATTACCAAATGGGG                         TCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC
genomic: CATCTACTTCATCTTCTAACATTACCAAATGGGGgtaattaaaa ... tttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC
EST: gi|124734212|gb|EH825614.1|EH825614
EST:     CAATTCGATAAACCGTCATCTACTTCATCTTCTAACATTACCAAATGGGG                         TCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCT
genomic: CAATTCGATAAACCGTCATCTACTTCATCTTCTAACATTACCAAATGGGGgtaattaaaa ... tttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCT
EST: gi|124887162|gb|EH966064.1|EH966064
EST:     TCTTCTAACATTACCAAATGGGG                         TCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC
genomic: TCTTCTAACATTACCAAATGGGGgtaattaaaa ... tttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggaaggattgcttttgtattgttatctcaaatgttttgtgttgtttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTCTGCCATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTCTTGATACT
                                          ttgtttctttc  CT-rich tract
             ttttgtattgttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattaaaaactctaactttactttgttttagtctctctagaggaaggattgcttttgtattgttatctcaaatgttttgtgttgtttctttcagTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCTCTGCTTATCTTCTCTGCCATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTCTTGATACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT