1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtttctcatttccaaacaagtaacatatcttaaatatgcatcaagtatcatacggtttatcacaatggttttctaatgataacgtgaatgctggggcagGTATTGGTTTGTGGCATTCTTCTGGTTGTGATGGCCATTGGAAACTTCATAAACACAGTAGAGACACTAATGGTGAAGTCGAGATTCAAGGCGAAGATGA
species | Arabidopsis thaliana |
transcript | AT1G33230.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATTCCAGTTGCTTAGGACAGTGTTGATGGGGGTAGTCGCTGAATGGCAG GTATTGGTTTGTGGCATTCTTCTGGTTGTGEST: gi|164148438|gb|ES174282.1|ES174282
genomic: GATTCCAGTTGCTTAGGACAGTGTTGATGGGGGTAGTCGCTGAATGGCAGgtataagtct ... gctggggcagGTATTGGTTTGTGGCATTCTTCTGGTTGTG
EST: GTTGATGGGGGTAGTCGCTGAATGGCAG GTATTGGTTTGTGGCATTCTTCTGGTTGTGATGGCCATTGGAAACTTCATA
genomic: GTTGATGGGGGTAGTCGCTGAATGGCAGgtataagtct ... gctggggcagGTATTGGTTTGTGGCATTCTTCTGGTTGTGATGGCCATTGGAAACTTCATA
gtatcatacggtttatcacaatggttttctaatgataacgtgaatgctggggcagGTATTGGTTTGTGGCATTCTTCTGGTTGTGATGGCCATTGGAAACTTCATAAACACAGTAGAGACACTAATGGTGAAGTCGAGATTCAAGGCGAAGATGA
tgataac putative branch site (score: 2)
ttttctaatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttctcatttccaaacaagtaacatatcttaaatatgcatcaagtatcatacggtttatcacaatggttttctaatgataacgtgaatgctggggcagGTATTGGTTTGTGGCATTCTTCTGGTTGTGATGGCCATTGGAAACTTCATAAACACAGTAGAGACACTAATGGTGAAGTCGAGATTCAAGGCGAAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - ccaaaca
- - - - - - - - - -agtaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatcaca