Sequence
atgc intronic sequence ATGC exonic sequenceGTGGCTTTATCATCATTATTTTGCAATGGCTATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTTCAGAAGCAGgtattgggtattaacttattatcatacatgcagagtaaaatctatccaacaaatgttatagattattctaaatctattgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G33230.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G33230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 6
GTGGCTTTATCATCATTATTTTGCAATGGCTATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTTCAGAAGCAGgta------ttgggtattaacttattatcata-catgcagagtaaaatctatccaacaaatgt---tatagattattctaaatctat-tgcag
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GTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttggtttcctagccctgtgcatatagttttttcttccttttttatttttaatcatgttgtgtaactattgtttgtctcaataatgcatgcag
upper sequence: AT1G33230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 6
GTGGCTTTATCATCATTATTTTGCAATGGCTATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTTCAGAAGCAGgtattgggtattaacttattatcatacatgcagagtaaaatctatccaacaaatgttatagattattctaaatctattgcag
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GTGGATATACCATCACTATTGTGCTATGATTATGGCTCTCGTTAGTCTCACATGGGAAATCAAGGGACAACCAAACTGCGCACAAAAGCAGgt------tactgcatttccattataaatt--gattaaatttttttatatttatttgataggaccatttaaatcttgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164144240|gb|ES090923.1|ES090923EST: TCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTTCAGAAGCAG AAAGGAGTGCGTCTTTTCCTCCAATGGGCTA
genomic: TCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTTCAGAAGCAGgtattgggta ... tctattgcagAAAGGAGTGCGTCTTTTCCTCCAATGGGCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGCTTTATCATCATTATTTTGCAATGGCTATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTTCAGAAGCAGgtattgggtattaacttattatcatacatgcagagtaaaatctatccaacaaatgttatagattattctaaatctattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC