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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATGCTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCACTTGGAAAGgtgccatactatttacatttttctctctccaaatcatatccaccactatgaaattgctgtaaaaatgtgtgtggtggtcattttcag

Basic information

species Arabidopsis thaliana
transcript AT1G33230.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G33230.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G44190.3 (Glycine max), 5'ss of exon 6
GCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATGCTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCACTTGGAAAGgtgccat------actatttacattt---ttctctctccaaatc-atatccaccactatgaaattgctgtaaaaatgtgtgtggtggtcattttcag------------------------------------------------------------------------------------------------------
 |  ||||| || || ||||||||||||||||| || || |||||| |||||||||||||||| ||||||||| | || ||||| |||||| | ||||||||  ||       |   ||||| |||   |||| | |||   || || |     |   |  |    |  | | ||    |    |  || ||||||                                                                                                       
ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaataaatagtttacttttactttctttttccttttctattttagttatattttacccaccctcacaa-acattctatcatccttttcaatcatgattaaacttttctttttccttataacatttatagttaaatctttcagagctggactgaaaatatataatatttgatccatgtttttctgtattttag

upper sequence: AT1G33230.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 7
GCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATGCTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCACTTGGAAAGgtgccatactatt------tacatttttctctctccaaatcatatccaccactatgaaatt---gctgtaaaaatgtgtgtggtggtcattttcag---------------------------------------------------------------------------------
 |  ||||| || || ||||||||||||||||| || || |||||| ||||||| |||||||| ||||||||| | || ||||| |||||| | |||||||||  ||||| ||      || ||||||   |        | | || |      | | |||    |       |    |    | ||| | ||||                                                                                  
ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCATTGGGAAAGgtg--atactgttaaataatatatttttacttgctttttccttttctattttagttatattttacccaccctcaaactttcaatcgtcctgttcaatcatgattaaatttttctttttccctatagcattttatagttaatatatatatttgatccgtgtttttctctgtactttag

upper sequence: AT1G33230.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 7
GCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATGCTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCACTTGGAAAGgtgccatactatttacatttttctctctccaaa---tcatatccaccactatgaaattgctgtaaaaatgtgtgtg----gtggtcattttcag------
 |  |||||||| |||||||||||||||||||| || || ||||| || |||||||||||||| ||||| ||| | || |||||||||||| | ||||||||| |||   |     ||| |  |   |  |||   | ||     ||    |     | || |    |||  | |     ||  | |||||  |      
ACAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTACTACAAAATAGATATCAACGCCAGAGACTTTATACTCGCATTGCATTGGGAAAGgtgtcatttcacaattattatcatgcatttaaaagcttatgcatgccttcttttggcttctttgggcatggttattctttgtcttgattttttgggtggg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125155318|gb|EL185506.1|EL185506
EST:     CATTGCACTTGGAAAG                         GCTAAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCA
genomic: CATTGCACTTGGAAAGgtgccatact ... tcattttcagGCT-AAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCA