Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccatactatttacatttttctctctccaaatcatatccaccactatgaaattgctgtaaaaatgtgtgtggtggtcattttcagGCTAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCAACTATTGCTATTATTTCCTATTTTGTTCACTTTACAG

Basic information

species Arabidopsis thaliana
transcript AT1G33230.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G33230.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM2G088648_T01 (Zea mays), 3'ss of exon 7
-----------gtgccatact--atttacatttttctctctccaaatcatatccaccactatgaaattgctgtaaaaatgtgtgtggtggtcattt-tcagGCTAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCAACTATTGCTATTATTTCCTATTTTGTTCACTTTACAG
           | |  |      |  || ||   | | |   |   |  |  |  |    |    |||  | |  || || |  |  || |  |   |||||||||||||||||| || ||||||||||| || ||||| || || || ||| | ||||| || |  ||| |  | ||    || |||
taggacttcaggagttaggacaaacctaaatggatttgtactcgtgtagttactgcagtcaaagtatttttttgtaagtg-gaattttgcttttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAATTGTTGCTGTTGTGCCCTCTCCTTTTTCTATTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125155318|gb|EL185506.1|EL185506
EST:     CATTGCACTTGGAAAG                         GCTAAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCA
genomic: CATTGCACTTGGAAAGgtgccatact ... tcattttcagGCT-AAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatatccaccactatgaaattgctgtaaaaatgtgtgtggtggtcattttcagGCTAAAAGGATGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCAACTATTGCTATTATTTCCTATTTTGTTCACTTTACAG
                                             tcattttc  CT-rich tract
              tatgaaatt  TA-rich tract