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AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctctctttttcacattagggttgtctttagtttctatggtttgatactttagacgattcgatgatgtggtgggttttgtaaagtctccttctgt...
species | Arabidopsis thaliana |
transcript | AT1G27110.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423243|gb|EG465835.1|EG465835
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116452156|gb|EG494748.1|EG494748
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116452140|gb|EG494732.1|EG494732
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116452146|gb|EG494738.1|EG494738
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423249|gb|EG465841.1|EG465841
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116452138|gb|EG494730.1|EG494730
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423251|gb|EG465843.1|EG465843
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116452152|gb|EG494744.1|EG494744
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423255|gb|EG465847.1|EG465847
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423246|gb|EG465838.1|EG465838
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116452142|gb|EG494734.1|EG494734
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGTGCCAAACTATEST: gi|116423254|gb|EG465846.1|EG465846
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423222|gb|EG465814.1|EG465814
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116452150|gb|EG494742.1|EG494742
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423221|gb|EG465813.1|EG465813
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423252|gb|EG465844.1|EG465844
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACGCCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423245|gb|EG465837.1|EG465837
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116452135|gb|EG494727.1|EG494727
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116452149|gb|EG494741.1|EG494741
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423247|gb|EG465839.1|EG465839
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423242|gb|EG465834.1|EG465834
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTATEST: gi|116423253|gb|EG465845.1|EG465845
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: ACGCCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctctctttttcacattagggttgtctttagtttctatggtttgatactttagacgattcgatgatgtggtgggttttgtaaagtctccttctgt
- - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttct