1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AACATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttcttgctgatcctgatttacaattatggagacttttttgagttctatgtcatatcataagaaccgtctttttctttctttcaaatcag
species | Arabidopsis thaliana |
transcript | AT1G27110.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428732|gb|EG471324.1|EG471324
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428746|gb|EG471338.1|EG471338
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACAGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428723|gb|EG471315.1|EG471315
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428724|gb|EG471316.1|EG471316
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428725|gb|EG471317.1|EG471317
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116378187|gb|EG420779.1|EG420779
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428726|gb|EG471318.1|EG471318
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428737|gb|EG471329.1|EG471329
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428742|gb|EG471334.1|EG471334
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTTTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428727|gb|EG471319.1|EG471319
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428740|gb|EG471332.1|EG471332
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428730|gb|EG471322.1|EG471322
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428729|gb|EG471321.1|EG471321
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428721|gb|EG471313.1|EG471313
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116378182|gb|EG420774.1|EG420774
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTTTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428747|gb|EG471339.1|EG471339
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTAEST: gi|116428745|gb|EG471337.1|EG471337
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGGGAAAGGAAACTACGAGATAGCTTTEST: gi|116428731|gb|EG471323.1|EG471323
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGG-AAAGGAAACTACGAGATAGCTTT
EST: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG CTTGCTGAAGCTGTTTATGAATACGGG
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttcttgctgatcctgatttacaattatggagacttttttgagttctatgtcatatcataagaaccgtctttttctttctttcaaatcag
- - - - - - - - CGAAGA
- - - - - - - - - AAGAAA
- - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - GCTGAT