Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGGGTCCTCTCAAGTTTCGGTCATATCCAAAATTTTTTTGGTTTTCCTTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatctttcttccgtatacataaggttgactaggtagttaatgcatatcttttggttatttcatttgccttctcatttattcttttaaccattgg...

Basic information

species Arabidopsis thaliana
transcript AT1G27110.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116423243|gb|EG465835.1|EG465835
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAACTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116452156|gb|EG494748.1|EG494748
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116452140|gb|EG494732.1|EG494732
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116452146|gb|EG494738.1|EG494738
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116423249|gb|EG465841.1|EG465841
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCA--                         ATAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116452138|gb|EG494730.1|EG494730
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116423251|gb|EG465843.1|EG465843
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116452152|gb|EG494744.1|EG494744
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116423246|gb|EG465838.1|EG465838
EST:     GAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: GAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116423245|gb|EG465837.1|EG465837
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116452135|gb|EG494727.1|EG494727
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116423247|gb|EG465839.1|EG465839
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCA--                         ATAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: gi|116423242|gb|EG465834.1|EG465834
EST:     TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG                         AAAGAAGAAAGCAGATTTGTTAACTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACGGGTCCTCTCAAGTTTCGGTCATATCCAAAATTTTTTTGGTTTTCCTTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatctttcttccgtatacataaggttgactaggtagttaatgcatatcttttggttatttcatttgccttctcatttattcttttaaccattgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctca