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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACCAGCTTGACACAAACAGTAATGTTTGATACAGCAAAGAAATTGGTGACTCTTTTCATGCCGGGGTTTGAAAAATCAGAAATCAAACTGTATCAGgtaaaaaggaacttctcatctccctcatattcgtcagttcttgtaaagctctctcatttcttttactcatctatgatggcataatgtgattgcttggaaagatcttctgttcatatggaattaagaactgcgaatgattttttgttttcttgatgaatctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G26090.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26090.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os02g48130.1 (Oryza sativa), 5'ss of exon 6
TGGGACCAGCTTGACACAAACAGTAATGTTTGATACAGCAAAGAAATTGGTGACTCTTTTCATGCCGGGGTTTGAAAAATCAGAAATCAAACTGTATCAGgtaaaaaggaacttctcatctccctcatattcgtcagttcttgtaaagctctctcatttcttttactcatctatgatggcataatgtgattgcttggaaagatcttctgttcatatggaattaagaactgcgaatgattttttgttttcttgatgaatctgcag
  | | ||   |    |   |||| |  |||||| | |   |||||| |||||| |||||||||||||| ||||| || || ||||||||||| ||||| ||||   || | ||  ||   | ||     |  |   |||     |     ||   |   |  ||||||||| |  ||||          || ||   |  ||||  ||||  | |     | | || |||                                 
AAGCAACAAAGTATACCCTTCAGTTAGTTTTGATTCTGTTCAGAAATCGGTGACCCTTTTCATGCCGGGCTTTGATAAGTCTGAAATCAAACTATATCAAgtaa---ggcagttaccagtactct-----ttcttgattcaaaggagcacatcatctcagtactactcatctctattggc----------tgttttcgacaatctgttgttt-tgt----ctgaaaaatgcag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116387050|gb|EG429642.1|EG429642
EST:     TGACTCTTTTCATGCCGGGGTTTGAAAAATCAGAAATCAAACTGTATCAG                         TATAGAGGAGGTTCTGAGCTCTTAATAGAAGCTGGGGACCAAAGACGAGTG
genomic: TGACTCTTTTCATGCCGGGGTTTGAAAAATCAGAAATCAAACTGTATCAGgtaaaaagga ... gaatctgcagTATAGAGGAGGTTCTGAGCTCTTAATAGAAGCTGGGGACCAAAGACGAGTG