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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctagttcattgtgttttgctattctttctgatttatctggtgcttctttccctttttgcaactcttagaaagtatgtttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAGGCTAACAAGTCCGTCCATTATGAGATTTGTTGATGAGTCAATGAACATA

Basic information

species Arabidopsis thaliana
transcript AT1G26090.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116387058|gb|EG429650.1|EG429650
EST:     ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAG                         ATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
genomic: ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttca ... tttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
EST: gi|116387061|gb|EG429653.1|EG429653
EST:     ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAG                         ATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
genomic: ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttca ... tttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
EST: gi|116387050|gb|EG429642.1|EG429642
EST:     ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAG                         ATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
genomic: ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttca ... tttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
EST: gi|116387063|gb|EG429655.1|EG429655
EST:     ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAG                         ATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGAGAGATTTGG
genomic: ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttca ... tttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGG
EST: gi|116387057|gb|EG429649.1|EG429649
EST:     ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAG                         ATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
genomic: ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttca ... tttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatctggtgcttctttccctttttgcaactcttagaaagtatgtttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAGGCTAACAAGTCCGTCCATTATGAGATTTGTTGATGAGTCAATGAACATA
                                           tgtttctt  CT-rich tract
                                 ttagaaa  TA-rich tract