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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGAAAGAATCACAAGGGGAAGCCTTTTGACGTTATAATTTATGATGGCATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttcattgtgttttgctattctttctgatttatctggtgcttctttccctttttgcaactcttagaaagtatgtttcttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G26090.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26090.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0011g02870.t01 (Vitis vinifera), 5'ss of exon 3
CCCGAAAGAATCACAAGGGGAAGCCTTTTGACGTTATAATTTATGATGGCATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttcattgtgttttgctattctttctgatttatctggtgcttctt-tccctttttgcaactcttagaaagtatgtttcttgtag
  ||||  |||| |       |    | |||| | || || |||||||| |||| |||||||||||| || || ||||||||| ||| ||||| | |||||| | |   | ||| | ||  |  |||||||   | |  ||||| || || | |  |      ||||| | | ||              
GTCGAAGAAATCTCCGAAAAGATAAATATGACATAATCATATATGATGGTATTAACACTGAGGAAACCCTACGCATGATAGGTGTAACCAGTAGAGCAAGgt-tggggaactgtctctt-tttctctttct--ctcacttggtgatttttatgcaatcgcatgactct-acacag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116387058|gb|EG429650.1|EG429650
EST:     ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAG                         ATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
genomic: ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttca ... tttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
EST: gi|116387061|gb|EG429653.1|EG429653
EST:     ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAG                         ATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
genomic: ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttca ... tttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
EST: gi|116387050|gb|EG429642.1|EG429642
EST:     ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAG                         ATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
genomic: ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttca ... tttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
EST: gi|116387063|gb|EG429655.1|EG429655
EST:     ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAG                         ATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGAGAGATTTGG
genomic: ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttca ... tttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGG
EST: gi|116387057|gb|EG429649.1|EG429649
EST:     ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAG                         ATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG
genomic: ATTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGgtctagttca ... tttcttgtagATTGTATGCGAAATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAG