1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgatctatttatcccataactcagtgtcttcaactaatttagctctgaaattacatatggacttttgcatactgtagACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTAATGGACCCAAACAATCCTATGTCTGTTAAAGCTGCATTACGGTATTGGG
species | Arabidopsis thaliana |
transcript | AT1G26090.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGTATGACAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTTGGAG ACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTAEST: gi|116387061|gb|EG429653.1|EG429653
genomic: ATGGTATGACAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTTGGAGgtgatctatt ... catactgtagACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTA
EST: ATGGTATGACAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTTGGAG ACTGGCGCTTCTGCTTGGAGAGATCCAGATAGATTCTTGAGTTTTCTTGTAEST: gi|116387050|gb|EG429642.1|EG429642
genomic: ATGGTATGACAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTTGGAGgtgatctatt ... catactgtagACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTA
EST: ATGGTATGACAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTTGGAG ACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTAEST: gi|116387057|gb|EG429649.1|EG429649
genomic: ATGGTATGACAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTTGGAGgtgatctatt ... catactgtagACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTA
EST: ATGGTATGACAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTTGGAG ACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTAEST: gi|124854202|gb|EH938639.1|EH938639
genomic: ATGGTATGACAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTTGGAGgtgatctatt ... catactgtagACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTA
EST: ACTTTGGAACGTTTCTTGGAG ACTGGCGCTTCNGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTA
genomic: ACTTTGGAACGTTTCTTGGAGgtgatctatt ... catactgtagACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTA
agtgtcttcaactaatttagctctgaaattacatatggacttttgcatactgtagACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTAATGGACCCAAACAATCCTATGTCTGTTAAAGCTGCATTACGGTATTGGG
aactaat putative branch site (score: 2)
cttttgc putative PPT
aaattacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatctatttatcccataactcagtgtcttcaactaatttagctctgaaattacatatggacttttgcatactgtagACTGGCGCTTCTGCTTGGAGAGATCCAGAGAGATTCAGGAGTTTTCTTGTAATGGACCCAAACAATCCTATGTCTGTTAAAGCTGCATTACGGTATTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC