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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataacaatcataaaccctaaaaacctcttctcctatggtttcatttactgaaactgatcaaaacttcttaaagctctttgtctgttgtctctatatacggtggttgctctctgataacattctgtaaaaaaatttcaatatcagAGCTGTAGAAAGCTTCTGGAGTTGATGACACTCGACGGCTATATGAAAGTGAGGGAAATGGTGCAAACCAAATTCACCGGTCCTCCGTCTCTGTTAGCCG

Basic information

species Arabidopsis thaliana
transcript AT1G17450.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116456408|gb|EG499000.1|EG499000
EST:     GACGAGATAATAAACCTAATGGACATACTAAATCCTCAG                         AGCTGTAGAAAGCTTCTGGGAGTTGATGACACTCGACGGCTATATGAAAGT
genomic: GACGAGATAATAAACCTAATGGACATACTAAATCCTCAGgtaataacaa ... tcaatatcagAGCTGTAGAAAGCTTCTGG-AGTTGATGACACTCGACGGCTATATGAAAGT
EST: gi|116456409|gb|EG499001.1|EG499001
EST:     GACGAGATAATAAACCTAATGGACATACTAAATCCTCAG                         AGCTGTAGAAAGCTTCTGGAGTTGATGACACTCGACGGCTATATGAAAGTG
genomic: GACGAGATAATAAACCTAATGGACATACTAAATCCTCAGgtaataacaa ... tcaatatcagAGCTGTAGAAAGCTTCTGGAGTTGATGACACTCGACGGCTATATGAAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatatacggtggttgctctctgataacattctgtaaaaaaatttcaatatcagAGCTGTAGAAAGCTTCTGGAGTTGATGACACTCGACGGCTATATGAAAGTGAGGGAAATGGTGCAAACCAAATTCACCGGTCCTCCGTCTCTGTTAGCCG
                      tgataac  putative branch site (score: 2)
                        ataacattctgtaaaa  TA-rich tract