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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATGGGTAAACGCAGATGGGTCAATAAATAAAATTGTCTTTGATGGACTAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAGgtaaatacttctccattttccacccaataagtttttgccatcatggtttcgaactctatgaaaatactaatcgaaacattcatttgtggcag

Basic information

species Arabidopsis thaliana
transcript AT1G17450.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17450.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv09s0002g01430.t01 (Vitis vinifera), 5'ss of exon 21
TCCATGGGTAAACGCAGATGGGTCAATAAATAAAATTGTCTTTGATGGACTAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAGgtaaatacttctccattttccacccaataagtttttgccatcatggtttcgaactctatgaaaatacta-atcgaaacattcatttgtggcag--------
 || ||| |||| |  ||||||||||| ||||  ||||| |   | |||||    ||||||||||||||||| |||||||||||||| || ||    |||||| || ||| ||||| |         |     | ||  ||  |   | ||| || |||||||| ||   |      ||  |  |      |         
GCCTTGGATAAATGGTGATGGGTCAATCAATAGGATTGTTTACAAGGGACTCACACGCCGTGTTCTTGGTACTGTGATGCAAAATCCTGGGATGTTGGAGgtacatgcttttccatatgtgtttttcttttactctggtatt-tctctccgatctatatgaaaaaaccctacttttgcagcctctcaatataatttcaaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116456408|gb|EG499000.1|EG499000
EST:     TAGTTCGCCGTGTTCTTGGTACCGTGACGCAAAATCCCGGTATACCAGAG                         GACGAGATAATAAACCTAATGGACATACTAAATCCTCAG
genomic: TAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAGgtaaatactt ... tttgtggcagGACGAGATAATAAACCTAATGGACATACTAAATCCTCAG
EST: gi|116456409|gb|EG499001.1|EG499001
EST:     TAGTTCGCCGTGTTCTTGGTACCGTGACGCAAAATCCCGGTATACCAGAG                         GACGAGATAATAAACCTAATGGACATACTAAATCCTCAG
genomic: TAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAGgtaaatactt ... tttgtggcagGACGAGATAATAAACCTAATGGACATACTAAATCCTCAG
EST: gi|116456420|gb|EG499012.1|EG499012
EST:     TAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAG                         GACGAGATAATAAACCTAATGGACATACTAA
genomic: TAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAGgtaaatactt ... tttgtggcagGACGAGATAATAAACCTAATGGACATACTAA