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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatacttctccattttccacccaataagtttttgccatcatggtttcgaactctatgaaaatactaatcgaaacattcatttgtggcagGACGAGATAATAAACCTAATGGACATACTAAATCCTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G17450.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116456408|gb|EG499000.1|EG499000
EST:     TAGTTCGCCGTGTTCTTGGTACCGTGACGCAAAATCCCGGTATACCAGAG                         GACGAGATAATAAACCTAATGGACATACTAAATCCTCAG
genomic: TAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAGgtaaatactt ... tttgtggcagGACGAGATAATAAACCTAATGGACATACTAAATCCTCAG
EST: gi|116456409|gb|EG499001.1|EG499001
EST:     TAGTTCGCCGTGTTCTTGGTACCGTGACGCAAAATCCCGGTATACCAGAG                         GACGAGATAATAAACCTAATGGACATACTAAATCCTCAG
genomic: TAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAGgtaaatactt ... tttgtggcagGACGAGATAATAAACCTAATGGACATACTAAATCCTCAG
EST: gi|116456420|gb|EG499012.1|EG499012
EST:     TAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAG                         GACGAGATAATAAACCTAATGGACATACTAA
genomic: TAGTTCGCCGTGTTCTTGGTACCGTGATGCAAAATCCCGGTATACCAGAGgtaaatactt ... tttgtggcagGACGAGATAATAAACCTAATGGACATACTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatcatggtttcgaactctatgaaaatactaatcgaaacattcatttgtggcagGACGAGATAATAAACCTAATGGACATACTAAATCCTCAG
                           tactaat  putative branch site (score: 1)
                                         ttcattt  putative PPT
                   tatgaaaatactaat  TA-rich tract