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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAGgtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtag

Basic information

species Arabidopsis thaliana
transcript AT1G10430.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G02990.1 (Glycine max), 5'ss of exon 4
GTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAGgt--aaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtag
 ||||||||||||||||||| || ||||| ||| ||||||| ||||||||||||||   ||||||||| |||||||||||      || |   |   |  |  | ||  | |     | | | ||    ||  |      | ||  |    |  ||| |  ||  |||  || || || |                                                                                    
ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgtttttaaatgattattgcaagcacttgcaatta-tgaattatttgatatgcagaacattttttatgcaaagtatgatga-tctttttgagttaga------------------------------------------------------------------------------------

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 4
GTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAGgtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtag
 ||||||||||||||||||| || ||||| ||| ||||||| ||||||||||||||   ||||||||| |||||||||||     |  |||| |    | |     ||| ||    ||   ||| ||   |||||| |  ||    | | |  ||      | | ||   ||  ||  ||   |      | |||                                                                   
ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgt-----ttgtgtttttaaatga-----ttattgcaagctc--ttgcaa---ttatgaatgattt---gatat--gtagaacatttttatgcaaagtatgatcttatgagttagaaatcc----------------------------------------------------------------

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 4
GTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAGgtaaccttcttgttctctgc-taaaggccttagtgtggacttagttggaagagttatga-gtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtag
 ||||||| ||||||||||| || ||||||||| ||||||| || ||||| ||| ||   |||||||| ||||| |||||     |    ||    || | || ||  |    ||   |  | |  |     ||||| |  | |  |   |  |||  |  |||||  | ||| ||||                                                                                      
ATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAACATCAGAGCATTGGATCGTATACAAGAGgtttgtatgcaattgctagcatgaatgcactgaattgccttatgatccatttaatatgaagaacatttttatttgcagaatgatgtcttgagtta-gatat-------------------------------------------------------------------------------------

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 4
GTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAGgtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtag
|| ||||||||||||||||| |||||||| ||| |||||||  | |||||||| ||| ||||||| || ||||||||||||   | |    | |  | ||   |  |  |||       | ||  |    |||||  |   |  |     | | ||  || |||||| |  | | |   |||                                                                                
GTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAATATTCGAGGCTTGGACCGTATACAGGAGgta-tgtgcacagttttggtta---gtttatgtgcttgacca-tttaagatcttatgcattgatttt--tcatgactgatttctctctattgcaaaaagctttatct-----------------------------------------------------------------------------