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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagagctgttctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtagGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAG

Basic information

species Arabidopsis thaliana
transcript AT1G10430.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA01G04570.1 (Glycine max), 3'ss of exon 3
gttagagct-gttctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtagGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAG
||| ||| |   | | |  |||   || |||   ||  | || |   |||       | | || || |   || ||  || ||||||||||||||||||| || ||||| ||| ||||||| ||||||||||||||   ||||||||| |||||||||
gtttgagtttaatatgttgcagaatgtttttctgactaccttatgccagtg------tctaacatccttgtatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G02990.1 (Glycine max), 3'ss of exon 3
gttagagctgttctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtagGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAG
||| ||| |    | | |       |||||  |  |     ||     | |   | | | || || |   || ||  || ||||||||||||||||||| || ||||| ||| ||||||| ||||||||||||||   ||||||||| |||||||||
gtttgagttaaa-tatgttgcacaatgtttctttgactgcctt----atgccagtgtctaacatccttgtatgttacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA18G17100.1 (Glycine max), 3'ss of exon 3
gttagagctgt-tctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtagGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAG
||| ||| |   | || |  ||| | | | |||   || || | |           || |  ||   |    | ||| || ||||||| ||||||||||| || ||||||||| ||||||| || ||||| ||| ||   |||||||| || || |||
gtttgagttaaatgttgcagagtggttatctgactaattttatgccggcctttaacttctacctctgt---gtattgcagATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAACATCAGAGCATTGGATCGTATTCAAGAG

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G40490.1 (Glycine max), 3'ss of exon 3
gttagagctgt-tctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtagGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAG
||| ||| |   | | |  |||    ||||  ||    ||  || || |  |||| |||  |||||     ||     || ||||||| ||||||||||| || ||||||||| ||||||| || ||||| ||| ||   |||||||| ||||| |||
gtttgagttaaatatgttgcag--aatgttc-atctgactaattttatgc-cagcattt-aacttctgtgtat---acagATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAACATCAGAGCATTGGATCGTATACAAGAG

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv01s0026g01080.t01 (Vitis vinifera), 3'ss of exon 3
gttagagctgttc---tttctca-gttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtagGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAG
||| ||| ||| |   ||||| | |||    ||||||| || |  |      ||| |         |       ||    ||||| ||||||||||||||||| |||||||| ||| |||||||  | |||||||| ||| ||||||| || |||||||||
gtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatagGTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAATATTCGAGGCTTGGACCGTATACAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtagGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAG
                               ttttgac  putative branch site (score: 3)
                                         atcaaatttt  TA-rich tract