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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgttagagctgttctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G10430.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G133464_T01 (Zea mays), 5'ss of exon 3
TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgt-tagagct--gttctttctcagttggtgtttgatacatctttttctaagtacagctttttgac-ttcatcaaa------ttttgtag
 ||||| |||||||| || || || |||||||| || ||||||||||||||||||||| | || |||| | | ||||| || || || ||||| | |||||| |  ||||   || | |    |||| |  | | || |   ||  || | || | |  |||||| ||    |||      ||||| ||
CTATGATGAATGCTTAAGAAAATATGGAAATGCAAATGTCTGGAAGTATTTTACAGACTTGTTTGATTTTTTGCCTCTCACAGCTCTTATAGAAAATCAGgtatgcagctcaattttgttatggttgatact-gttataggcttg-ctgaatatatccctttgacatttgagaaacatccattttgcag

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G038195_T01 (Zea mays), 5'ss of exon 3
TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgttagagctgttctttctca--gttggtgtt-tgatacatctttttctaagtaca-gctttttgacttcatcaa-----attttgtag
 ||||| |||||||| || || || |||||||| || || |||||||||||||||||| | || |||||| | ||||| || || || ||||| | ||||||  |     |  ||| | |  |||| || | | |||   ||| ||  |  || | || |||  | || |  ||     ||||   ||
CTATGATGAATGCTTAAGAAAATATGGAAATGCAAATGTATGGAAGTATTTTACAGACTTGTTTGATTATTTGCCTCTCACAGCTCTTATAGAAAATCAGgtatgcatcttaatttgttatggttgatgctattatagg-cttgttgaatatatatgcctttacatttgagaaacatccatttcacag

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgttagagctgt-tctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtag
 ||||| ||||||||||| || || |||||||| || |||||||| || ||||||||| | || |||||| | ||||| || |||||||| |||||||||||| ||| |   | | |  |||    ||||  ||    ||  || || |  |||| |||  |||||     ||   |   
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagttaaatatgttgcag--aatgttc-atctgactaattttatgc-cagcattt-aacttctgtgtatacag---

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G17100.1 (Glycine max), 5'ss of exon 3
TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgttagagctgt-tctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtag
 ||||| ||||||||||| || || |||||||| || |||||||| || ||||||||| | || |||||| | ||||| || |||||||| |||||||||||| ||| |   | || |  ||| | | | |||   || || | |           || |  ||   |    | ||| ||
CTATGATGAATGCTTGAGAAAATATGGAAATGCGAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTGCCTCTGACTGCCCTCATTGAGAGTCAGgtttgagttaaatgttgcagagtggttatctgactaattttatgccggcctttaacttctacctctgt---gtattgcag

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G02990.1 (Glycine max), 5'ss of exon 3
TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgttagagctgttctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtag
 ||||||||||||||||| ||||| |||||||| || |||||||| |  || || ||| | || |||||| | ||||| || ||||| || |||||||||||| ||| |    | | |       |||||  |  |     ||     | |   | | | || || |   || ||  ||
CTATGACGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTCACCGACTTGTTTGATTATTTACCTCTGACTGCCCTTATTGAGAGTCAGgtttgagttaaa-tatgttgcacaatgtttctttgactgcctt----atgccagtgtctaacatccttgtatgttacag

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgttagagct-gttctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtag
 || || ||||||||||| ||||| |||||||| || |||||||| |  ||||| ||  | || |||||| | ||||| |||||||| || |||||||||||| ||| |   | | |  |||   || |||   ||  | || |   |||       | | || || |   || ||  ||
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagtttaatatgttgcagaatgtttttctgactaccttatgccagtg------tctaacatccttgtatattacag

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgttagagctgttc---tttctca-gttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtag
|||||||||||||||||| || || |||||||| || ||||||||||||||||| |||||||| |||||||| || ||||| |||||||| |||||||||||| ||| ||| |   ||||| | |||    ||||||| || |  |      ||| |         |       ||    |||
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag