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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC

Basic information

species Arabidopsis thaliana
transcript AT1G10430.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os02g12580.1 (Oryza sativa), 3'ss of exon 4
gtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC
                                                                              |  || |  |||||  | | || || || |      | |  ||     || ||| | | || || ||  ||||||  |   || |  |    |   || | || ||||||| || |||||||| ||||||||| | || |||||||| || |||||  |||| || |||||||| || ||  |||| || |||||||||||||| |
-----------------------------------------------------------------------------cttgtgcccatacttctgttgcatttgcaga------agaaattgcactttatttctcaaatgttctttgtcagctaatgttacaaatttcactaaatgct-tgcagGTTCCTCATGAAGGACCCATGTGTGATCTTTTGTGGTCTGACCCAGATGACAGATGCGGGTGGGGAATTTCACCGAGAGGAGCAGGTTATACATTTGGGC

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os06g37660.1 (Oryza sativa), 3'ss of exon 4
gtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC
                                                                                   | | | ||  |  | ||           |   |   |||  | ||| |   || ||| |||  ||   || | || ||  |||    | |      | ||||| || || ||||| || ||||||||| | || |||||||| || || ||||||||||| |||||||| |||||| |||| || || || || ||||| |
---------------------------------------------------------------------------------catatgtgctgtatttgcacacttttttgtcttgataatttatagtttatg--gaaatcatatgttttgact-tatgcaccctgttctctttaatggttatagGTCCCTCATGAAGGGCCCATGTGTGATCTTTTGTGGTCTGACCCGGACGATCGATGTGGGTGGGGAATTTCTCCAAGAGGGGCAGGATACACGTTTGGGC

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G119546_T01 (Zea mays), 3'ss of exon 4
gtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgat---------ctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC
                                                                                          ||||| || || ||  |  ||        | |   |||||   |||  ||| ||| ||    || ||||   || | |  | ||| ||         |||||||| || || |||||||||||||||||| | || |||||||| || |||||  |||||||||||||||| || ||| | |||||||| || |||||||| |
------------------------------------------------------------------------------------------ttaaggtataaatatcat-agtttttgtatataatattttgc-tgatttctcatt-ttgtcttccttgattaatatttcctctgttatttaaaatggctgtagGTCCCGCATGAAGGACCTATGTGTGATCTTTTGTGGTCTGACCCGGATGACAGATGTGGATGGGGAATTTCACCAAGGGGTGCTGGATACACATTTGGCC

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G133464_T01 (Zea mays), 3'ss of exon 4
gtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC
                                                                  ||  |     |  ||||    | |||  | |  | | |   |  |||  |    ||  ||| ||||         || |  ||| ||| |    |||   |  |||||||      ||||||| || |||||||| ||||||||| | || |||||||| || ||||| ||||||||||||||||| || ||| |||| || ||||| |||||||| |
-----------------------------------------------------------------ttgaatt--gatagcttgctaattcttgtgctgtattaattgaatgcatta-tacttctaatctttt---------taatcctcaactcgtatgcctaaaaa--atgtgtg-----cagGTTCCTCATGAAGGACCCATGTGTGATCTTTTGTGGTCTGACCCAGATGACCGATGTGGATGGGGAATTTCACCAAGAGGAGCAGGTTACACATTTGGGC

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G02990.1 (Glycine max), 3'ss of exon 4
gtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC
                                                                        ||| |    | | |     |    || || || |  || |  ||    ||| | || || |    |||||      ||  |     |||| |      ||||  ||  ||||||||||||||||||||| ||||||||  | || ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||
------------------------------------------------------------------------tcatttctgtatatacctcttgtctaaaactatatcga-cgaaattaattgtatttcttga----atcttgcctgacaagtgac--aactgta---actgtgcaat--gtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGAC

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA01G04570.1 (Glycine max), 3'ss of exon 4
gtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC
                                                                        ||| |    ||| | ||||| |  |  ||    | |  |   |||    | |||||| ||     |||||      ||  |     |||| |      ||||  ||  ||||||||||||||||||||| ||||||||  | || ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||
------------------------------------------------------------------------tcatt--tctgtatatacttcatgtctaaaactatatcgacaaaattaattgaatttcttga---atcttgcctgacaagtgac--aactgta---actgtgcaat--gtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGAC

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G40490.1 (Glycine max), 3'ss of exon 4
gtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC
                                                                                 |    |    |   || | |||      | ||      || |  |  |    ||  ||  | |     || |  |  ||| |  | |  | | |    |  |||||||||| |||||||| ||||||||| | || |||||||| ||||||||||| ||||||||||||||||||||||| ||||| || || ||||||||||
---------------------------------------------------------------------------------tactccacaatggaatgctattttcttaa-catttgtattggctagataccttgtgattatgtctcctagtttgtctaacaac-tgtacttt-tatgttacagGTTCCACATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCTGATGATCGCTGTGGATGGGGAATATCTCCACGTGGTGCAGGATACACATTTGGAC

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA18G17100.1 (Glycine max), 3'ss of exon 4
gtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC
                                                                              || |  | | |  ||  || | ||| |  |        |   |    ||   || |||  |  | |      | |     ||| |  | |  | |||    |  |||||||||| |||||||| ||||||||| | || |||||||| ||||||||||| ||||||||||||||||||||||| ||||| || || |||||||| |
-----------------------------------------------------------------------------atccta-cacga--tagaatgctatttcttaacatttgtattgtccagataccttgtga--ttatgtcacctggtttgcctaacaac-tgtact-tgtatgttacagGTTCCACATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCTGATGATCGCTGTGGATGGGGAATATCTCCACGTGGTGCAGGATACACATTTGGGC

upper sequence: AT1G10430.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv01s0026g01080.t01 (Vitis vinifera), 3'ss of exon 4
gtaaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC
                                                                        ||  ||||     |||  |   | |   ||| |   |    |   | |||   |||||||   || | | |   ||  |||  | ||  | | | ||      | |  |||||||||||| |||||||||||||| ||| | || ||||| ||||||||||| || ||||| ||||| ||||||||||| || || || ||||| |||||||
----------------------------------------------------------------------attctctgtcaaacttctcatggtgttctgatttccttgttttc---cattt---atttttttcaacctttcacaatt--gctgatggatttgtttgtg------ggtaagtagGTTCCACATGAAGGACCTATGTGCGATCTCTTGTGGTCGGATCCTGATGACCGTTGTGGGTGGGGTATATCTCCACGTGGAGCAGGCTATACTTTTGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtagGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGATCCTGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGAC
        atcttatt  TA-rich tract