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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACACTAGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATGgtaactaaaagctacacaagcttgcttctctcatatatctatctgtcgtttcctttgaattgtctttaaaacatcttcttcttatcttag

Basic information

species Arabidopsis thaliana
transcript AT1G10120.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116448308|gb|EG490900.1|EG490900
EST:     GATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCCCCTAATG                         GTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGG
genomic: GATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATGgtaactaaaa ... cttatcttagGTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGG
EST: gi|124799908|gb|EH889587.1|EH889587
EST:     GATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATG                         GTCGATTGAAACCTGAGCTCTAGTA
genomic: GATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATGgtaactaaaa ... cttatcttagGTCGATTGAAACCTGAGCTCTAGTA
EST: gi|125111883|gb|EL163183.1|EL163183
EST:     AATCCATCGACTATGTCCAGTTTCTCACCTAATG                         GTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGG
genomic: AATCCATCGACTATGTCCAGTTTCTCACCTAATGgtaactaaaa ... cttatcttagGTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGG