Sequence
atgc intronic sequence ATGC exonic sequenceATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAGgtaagattatcccagtaatgcgagattcttgaaactctcaagttagtttggtgtgaaagaggttttctttcttgaaaaactgcttttattttcttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G10120.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G10120.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G092091_T02 (Zea mays), 5'ss of exon 3
ATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAGgta---agattatcccagtaatgcgagattcttgaaactctcaagttagtttggtgtgaaagaggttttctttcttgaaaaactgcttttattttcttcag
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ATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCATTGCAACGACAAGTGGAGgtagtgatagtgcatctgtagttgaattgctttggaatatgtgtgacatcttgttagtatatataatccagttct---aatacaatttcgaacttg--cag
upper sequence: AT1G10120.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G385543_T01 (Zea mays), 5'ss of exon 5
ATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAGgtaagattatccca---gtaatgcgagattcttgaaactctcaagttagtttggtgtgaaagaggttttctttcttgaaaaactgcttttattttcttcag
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ATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTGCAGTCATTGCAACGACAAGTCGAGgtagtgttagtgcatctgtagctgaattgttttggaatatatgtggcatcttgtt----agtatatatccagtattctaatacagtttcgagcttg--cagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19876968|gb|AU237799.1|AU237799EST: TGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAG TTTTTGTCTATGAAACTTGCGACGG
genomic: TGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAGgtaagattat ... ttttcttcagTTTTTGTCTATGAAACTTGCGACGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTATGTTCAGTCATTGCAACAGCAAGTTGAGgtaagattatcccagtaatgcgagattcttgaaactctcaagttagtttggtgtgaaagaggttttctttcttgaaaaactgcttttattttcttcag
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