1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaactaaaagctacacaagcttgcttctctcatatatctatctgtcgtttcctttgaattgtctttaaaacatcttcttcttatcttagGTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGGGAGTTTGTATAGAAGATGGCTTTGGTTCTAAGTATCATATGTGTTCGTT
species | Arabidopsis thaliana |
transcript | AT1G10120.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCCCCTAATG GTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGGEST: gi|124799908|gb|EH889587.1|EH889587
genomic: GATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATGgtaactaaaa ... cttatcttagGTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGG
EST: GATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATG GTCGATTGAAACCTGAGCTCTAGTAEST: gi|125111883|gb|EL163183.1|EL163183
genomic: GATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATGgtaactaaaa ... cttatcttagGTCGATTGAAACCTGAGCTCTAGTA
EST: AATCCATCGACTATGTCCAGTTTCTCACCTAATG GTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGG
genomic: AATCCATCGACTATGTCCAGTTTCTCACCTAATGgtaactaaaa ... cttatcttagGTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGG
tatctatctgtcgtttcctttgaattgtctttaaaacatcttcttcttatcttagGTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGGGAGTTTGTATAGAAGATGGCTTTGGTTCTAAGTATCATATGTGTTCGTT
catcttcttcttatct CT-rich tract
aattgtctttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaaaagctacacaagcttgcttctctcatatatctatctgtcgtttcctttgaattgtctttaaaacatcttcttcttatcttagGTCGATTGAAACCTGAGCTCTAGTACTTCAAGGACACGGAAAATTTGCAGGGAGTTTGTATAGAAGATGGCTTTGGTTCTAAGTATCATATGTGTTCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG