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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaccgctttgaagaaattaaacaacatattatgttcaatgttttggtattgctgtaaatagtctttcttgtctcatcttgcagACAACACTAGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATG

Basic information

species Arabidopsis thaliana
transcript AT1G10120.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116448308|gb|EG490900.1|EG490900
EST:     TACCAAACCTTTTTGCCACCACAAATCCCCAATACAACCCCCTACCTCAG                         ACAACACTAGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCA
genomic: TACCAAACCTTTCTGCCACCACAAATCCACAATACAACCCACTACCTCAGgtaagcaacc ... catcttgcagACAACACTAGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgttcaatgttttggtattgctgtaaatagtctttcttgtctcatcttgcagACAACACTAGAGAGTGAACTACAAAACCTTTACCAGATGGGATTCGTCTCAAATCCATCGACTATGTCCAGTTTCTCACCTAATG
                                 tctttcttgtctcatc  CT-rich tract
        aatgtttt  TA-rich tract