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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGgtacttaataacctctgaagtattcgttttatgagttccatgtggtttacgaacagcattttaatacctgtaatatcttgaatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G07980.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164173864|gb|ES058107.1|ES058107
EST:     ACCTCTCATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAG                         ATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA
genomic: ACCTCTCATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGgtacttaata ... ttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA
EST: gi|86078563|gb|DR374320.1|DR374320
EST:     CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAG                         ATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA
genomic: CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGgtacttaata ... ttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA
EST: gi|19876673|gb|AU237504.1|AU237504
EST:     CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAG                         ATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA
genomic: CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGgtacttaata ... ttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA
EST: gi|164005729|gb|ES102341.1|ES102341
EST:     GACCAGAGATACGAGTTCCTTGCAG                         ATAGTGTTCCCGAGAAACTTAAATCAGAGGCCGCGTTGGAGGAATGGGAAA
genomic: GACCAGAGATACGAGTTCCTTGCAGgtacttaata ... ttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA