1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAGGACAAAAAGAAATTCATCCACTACAAACACCTCTgtaagctctaatctcgtccctatttgccaatatctggttacctcaatactgaatcccatgtcgaaaatctcatgctgctgcaccaattgctgaacttagg...
species | Arabidopsis thaliana |
transcript | AT1G07980.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGATAGTTCCGTCAAGGACAAAAAGAAATTCATCCACTACAAACACCTCT CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGEST: gi|19876673|gb|AU237504.1|AU237504
genomic: TGATAGTTCCGTCAAGGACAAAAAGAAATTCATCCACTACAAACACCTCTgtaagctcta ... tcgttggcagCATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAG
EST: TGATAGTTCCGTCAAGGACAAAAAGAAATTCATCCACTACAAACACCTCT CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAG
genomic: TGATAGTTCCGTCAAGGACAAAAAGAAATTCATCCACTACAAACACCTCTgtaagctcta ... tcgttggcagCATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAGGACAAAAAGAAATTCATCCACTACAAACACCTCTgtaagctctaatctcgtccctatttgccaatatctggttacctcaatactgaatcccatgtcgaaaatctcatgctgctgcaccaattgctgaacttagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcatgc