1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacttaataacctctgaagtattcgttttatgagttccatgtggtttacgaacagcattttaatacctgtaatatcttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAAGAGGCATGACAGATGCAGGCTGAAATAAATCCGGTTGGAATCGAACTGA
species | Arabidopsis thaliana |
transcript | AT1G07980.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCTCTCATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAG ATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAAEST: gi|86078563|gb|DR374320.1|DR374320
genomic: ACCTCTCATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGgtacttaata ... ttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA
EST: CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAG ATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAAEST: gi|19876673|gb|AU237504.1|AU237504
genomic: CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGgtacttaata ... ttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA
EST: CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAG ATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAAEST: gi|164005729|gb|ES102341.1|ES102341
genomic: CATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGgtacttaata ... ttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA
EST: GACCAGAGATACGAGTTCCTTGCAG ATAGTGTTCCCGAGAAACTTAAATCAGAGGCCGCGTTGGAGGAATGGGAAA
genomic: GACCAGAGATACGAGTTCCTTGCAGgtacttaata ... ttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAA
gagttccatgtggtttacgaacagcattttaatacctgtaatatcttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAAGAGGCATGACAGATGCAGGCTGAAATAAATCCGGTTGGAATCGAACTGA
ttttaat putative branch site (score: 3)
attttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttaataacctctgaagtattcgttttatgagttccatgtggtttacgaacagcattttaatacctgtaatatcttgaatgcagATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAAGAGGCATGACAGATGCAGGCTGAAATAAATCCGGTTGGAATCGAACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG