1 5' 3' | 2 5' 3' | 3 5' 3' |
GATCAAGTTTCCGATGAATCGGATTCGGCGGATCATGAGAAGCGATAATTCTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGgtatagtactaattagacatataaatttagcttgaggaacttaatttcacatggtttttgatgaatttgggagtatcaattgctagtcagtgttaattgg...
species | Arabidopsis thaliana |
transcript | AT1G07980.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACG GAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAGEST: gi|86019064|gb|DR314810.1|DR314810
genomic: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGgtatagtact ... gtgattgaagGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAG
EST: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACG GAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAEST: gi|19876673|gb|AU237504.1|AU237504
genomic: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGgtatagtact ... gtgattgaagGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAA
EST: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACG GAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAGEST: gi|86019063|gb|DR314809.1|DR314809
genomic: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGgtatagtact ... gtgattgaagGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAG
EST: TGCTCCTCAGATTATGCAGGATGCTGTNATTTCTTGTCAACAAAGCCACG GAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTEST: gi|86019065|gb|DR314811.1|DR314811
genomic: TGCTCCTCAGATTATGCAGGATGCTGT-ATTTCTTGTCAACAAAGCCACGgtatagtact ... gtgattgaagGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCT
EST: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACG GAGATGTTCATTGAGCGGEST: gi|86019070|gb|DR314816.1|DR314816
genomic: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGgtatagtact ... gtgattgaagGAGATGTTCATTGAGCGG
EST: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACG GAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCEST: gi|86019067|gb|DR314813.1|DR314813
genomic: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGgtatagtact ... gtgattgaagGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTC
EST: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACG GAGATGTTCATEST: gi|86019066|gb|DR314812.1|DR314812
genomic: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGgtatagtact ... gtgattgaagGAGATGTTCAT
EST: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACG GAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAEST: gi|86019072|gb|DR314818.1|DR314818
genomic: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGgtatagtact ... gtgattgaagGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAA
EST: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACG GAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTT
genomic: CTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGgtatagtact ... gtgattgaagGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCAAGTTTCCGATGAATCGGATTCGGCGGATCATGAGAAGCGATAATTCTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGgtatagtactaattagacatataaatttagcttgaggaacttaatttcacatggtttttgatgaatttgggagtatcaattgctagtcagtgttaattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG