1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTGATGACATAAGAACGAAAGGCAAAGATCTTTTTCAGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAAGAACTTGGgtaatgttttacaaagatacttgcatcttctcaactgaagtggatcataatcattaatagactaacccgaaaagaccataaatttcag
species | Arabidopsis thaliana |
transcript | AT1G05060.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAAGAACTTGG GCTGAAAACATGTCGAAGAAGTGGCATATTGAGAATGAAGGTGGTAATACTEST: gi|124755340|gb|EH845470.1|EH845470
genomic: AGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAAGAACTTGGgtaatgtttt ... taaatttcagGCTGAAAACATGTCGAAGAAGTGGCATATTGAGAATGAAGGTGGTAATACT
EST: AGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAAGAACTTGG GCTGAAAACATGTCGAAGAAGTGGCATATTGAGAATEST: gi|164197704|gb|ES057470.1|ES057470
genomic: AGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAAGAACTTGGgtaatgtttt ... taaatttcagGCTGAAAACATGTCGAAGAAGTGGCATATTGAGAAT
EST: GAACAAGTAGAGCCCTTAAAGAACTTGG GCTG-AAACATGTCGAAGAAGTGGCATATTGAGAATGAAGGTGGTAATACTEST: gi|86080231|gb|DR375988.1|DR375988
genomic: GAACAAGTAGAGCCCTT-AAGAACTTGGgtaatgtttt ... taaatttcagGCTGAAAACATGTCGAAGAAGTGGCATATTGAGAATGAAGGTGGTAATACT
EST: AGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAAGAACTTGG GCTGAAAACATGTCGAAGAAGTGGCATATTGAGAATGAAGGTGGTAATACT
genomic: AGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAAGAACTTGGgtaatgtttt ... taaatttcagGCTGAAAACATGTCGAAGAAGTGGCATATTGAGAATGAAGGTGGTAATACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGATGACATAAGAACGAAAGGCAAAGATCTTTTTCAGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAAGAACTTGGgtaatgttttacaaagatacttgcatcttctcaactgaagtggatcataatcattaatagactaacccgaaaagaccataaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC