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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAATCTGACCCGAACGCAACAGTTTCTATATCCCCTGATGTCTTGAATCCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaattagggttttatactctgtttcacttgatgagtatttcaaaattttggatttgttgttaatttgtgtcgatttttattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G05060.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86046597|gb|DR342352.1|DR342352
EST:     CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAG                         ATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
genomic: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
EST: gi|116475903|gb|EG518495.1|EG518495
EST:     CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTATAAG                         ATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
genomic: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
EST: gi|124907635|gb|EH981715.1|EH981715
EST:     CCACAAGTCACTTTCGGCCGTAGAAG                         ATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
genomic: CCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
EST: gi|86080231|gb|DR375988.1|DR375988
EST:     CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAG                         ATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
genomic: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
EST: gi|86046598|gb|DR342353.1|DR342353
EST:     CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTSACTTTCGGCCGTAGAAG                         ATGGGATTTACCGGAATCTGAGGAATTCGGTTTTGGGCGTCAACAGCTA
genomic: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAG-AATTCGGTTTTGG-CGTCAACAGCTA
EST: gi|86046596|gb|DR342351.1|DR342351
EST:     CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAG                         ATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
genomic: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA