1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcaaattagggttttatactctgtttcacttgatgagtatttcaaaattttggatttgttgttaatttgtgtcgatttttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAATTGAGGAGAGACAGATACGGCACTCCTGTAAATCCTGAGAAATTGAAA
species | Arabidopsis thaliana |
transcript | AT1G05060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAG ATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAEST: gi|116475903|gb|EG518495.1|EG518495
genomic: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
EST: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTATAAG ATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAEST: gi|124907635|gb|EH981715.1|EH981715
genomic: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
EST: CCACAAGTCACTTTCGGCCGTAGAAG ATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAEST: gi|86080231|gb|DR375988.1|DR375988
genomic: CCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
EST: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAG ATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAEST: gi|86046598|gb|DR342353.1|DR342353
genomic: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
EST: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTSACTTTCGGCCGTAGAAG ATGGGATTTACCGGAATCTGAGGAATTCGGTTTTGGGCGTCAACAGCTAEST: gi|86046596|gb|DR342351.1|DR342351
genomic: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAG-AATTCGGTTTTGG-CGTCAACAGCTA
EST: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAG ATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
genomic: CCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTAGAAGgttcaaatta ... tttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGA
atgagtatttcaaaattttggatttgttgttaatttgtgtcgatttttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAATTGAGGAGAGACAGATACGGCACTCCTGTAAATCCTGAGAAATTGAAA
tgttaat putative branch site (score: 3)
tttttatt putative PPT
tatttcaaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaaattagggttttatactctgtttcacttgatgagtatttcaaaattttggatttgttgttaatttgtgtcgatttttattgcagATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAATTGAGGAGAGACAGATACGGCACTCCTGTAAATCCTGAGAAATTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA