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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attctgttattgtcttttgtcttttaatgttaattgatgtcgtgaagtgttcggaaagtttgcctaatctcgagccctctgatttttctggtttctgcagTTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTTTGGTTTTTGGAACGGCAGCCTCGAAACTTGACATGCGTAAT

Basic information

species Arabidopsis thaliana
transcript AT1G05060.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125003003|gb|EL075272.1|EL075272
EST:     GTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATA                         TTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTT
genomic: GTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATAgtatgatcac ... gtttctgcagTTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTT
EST: gi|116475903|gb|EG518495.1|EG518495
EST:     TCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATA                         TTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTT
genomic: TCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATAgtatgatcac ... gtttctgcagTTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTT
EST: gi|124862793|gb|EH947230.1|EH947230
EST:     TCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATA                         TTGGAAAAGCATTTGCAG
genomic: TCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATAgtatgatcac ... gtttctgcagTTGGAAAAGCATTTGCAG
EST: gi|125303034|gb|EL317119.1|EL317119
EST:     TCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATA                         TTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTT
genomic: TCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATAgtatgatcac ... gtttctgcagTTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTT
EST: gi|86080231|gb|DR375988.1|DR375988
EST:     TCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATA                         TTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTT
genomic: TCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATAgtatgatcac ... gtttctgcagTTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTT
EST: gi|86046596|gb|DR342351.1|DR342351
EST:     TCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATA                         TTGGAAAAAGCATTTGC
genomic: TCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGCTTCAACATAgtatgatcac ... gtttctgcagTTGGAAAA-GCATTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgttcggaaagtttgcctaatctcgagccctctgatttttctggtttctgcagTTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTTTGGTTTTTGGAACGGCAGCCTCGAAACTTGACATGCGTAAT
                                     tttttctggtttct  CT-rich tract
 tgattttt  TA-rich tract