1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtagtcagtagcttcctaaatctgtcaaatccgaatctagtgtaatatgaaatggttttgtttgcctattccggagacagtcagctaacttatgtcctcttcttagGCATAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTCTTGGAAAGACATCTCAGATATGTTTGATGAGAAATG
species | Arabidopsis thaliana |
transcript | AT1G03030.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGGATCCAGTTGAAGATGATATCTTTGTTAGCCTCCA GCATAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTCEST: gi|86085201|gb|DR380960.1|DR380960
genomic: GGGATCCAGTTGAAGATGATATCTTTGTTAGCCTCCAgtaagtagtc ... ctcttcttagGCATAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTC
EST: GATCATGGAGTTGGGGATCCAGTTGAAGATGATATCTTTGTTAGCCTCCA GCATAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTC
genomic: GATCATGGAGTTGGGGATCCAGTTGAAGATGATATCTTTGTTAGCCTCCAgtaagtagtc ... ctcttcttagGCATAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTC
atggttttgtttgcctattccggagacagtcagctaacttatgtcctcttcttagGCATAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTCTTGGAAAGACATCTCAGATATGTTTGATGAGAAATG
agctaac putative branch site (score: 2)
cttatgtcctcttctt CT-rich tract
taacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagtcagtagcttcctaaatctgtcaaatccgaatctagtgtaatatgaaatggttttgtttgcctattccggagacagtcagctaacttatgtcctcttcttagGCATAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTCTTGGAAAGACATCTCAGATATGTTTGATGAGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG