1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttcacaattctctgtttttccttatcggattatgattaagagcttgctacagatattaattaatctccccttttcgcgattcatattgcagAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTGTTCCTCTTCATTTCAGCATTCGAAAACGAAAGAACACCCCTCGTTATTT
species | Arabidopsis thaliana |
transcript | AT1G03030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAG AATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTGEST: gi|116454044|gb|EG496636.1|EG496636
genomic: TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAGgtttcacaat ... catattgcagAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTG
EST: TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAG AATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTGEST: gi|116454043|gb|EG496635.1|EG496635
genomic: TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAGgtttcacaat ... catattgcagAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTG
EST: TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAG AATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTG
genomic: TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAGgtttcacaat ... catattgcagAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTG
taagagcttgctacagatattaattaatctccccttttcgcgattcatattgcagAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTGTTCCTCTTCATTTCAGCATTCGAAAACGAAAGAACACCCCTCGTTATTT
tacagatattaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcacaattctctgtttttccttatcggattatgattaagagcttgctacagatattaattaatctccccttttcgcgattcatattgcagAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTGTTCCTCTTCATTTCAGCATTCGAAAACGAAAGAACACCCCTCGTTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC