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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGTGATAATTTCAGTTATTGATCTGTGCGTTCATCAATGGAGGTTTCTTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAGgtttcacaattctctgtttttccttatcggattatgattaagagcttgctacagatattaattaatctccccttttcgcgattcatattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G03030.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876407|gb|AU237238.1|AU237238
EST:     TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAG                         AATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTG
genomic: TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAGgtttcacaat ... catattgcagAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTG
EST: gi|116454044|gb|EG496636.1|EG496636
EST:     TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAG                         AATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTG
genomic: TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAGgtttcacaat ... catattgcagAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTG
EST: gi|116454043|gb|EG496635.1|EG496635
EST:     TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAG                         AATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTG
genomic: TTCTTTCTCCACTGTACCCAGATACTGTAACTCACGCTCCTTTGTTCCAGgtttcacaat ... catattgcagAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCAATCTCTTG