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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGTCACTGCAAGAGTCTTGCACCGgttagtacatggttctcgtttgagttcttgacacattctattgtggttttactcttgtaagcacccttggcgatcttcatcatttctgatatgtctaatcataatctttattgtttcag

Basic information

species Zea mays
transcript GRMZM2G128171_T04
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40337309|gb|CK371379.1|CK371379
EST:     GTGTGGTCACTGCAAGAGTCTTGCACCG                         ACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATT
genomic: GTGTGGTCACTGCAAGAGTCTTGCACCGgttagtacat ... attgtttcagACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATT
EST: gi|60351178|gb|DN218151.1|DN218151
EST:     GTGTGGTCACTGCAAGAGTCTTGCACCG                         ACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATT
genomic: GTGTGGTCACTGCAAGAGTCTTGCACCGgttagtacat ... attgtttcagACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATT
EST: gi|37398024|gb|CF636321.1|CF636321
EST:     GTGTGGTCACTGCAAGAGTCTTGCACCG                         ACGTATGAGAAGGTGGCTTCTGTTTTCAAGTGGGATGAAGGAGTTGTTATT
genomic: GTGTGGTCACTGCAAGAGTCTTGCACCGgttagtacat ... attgtttcagACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATT
EST: gi|71311893|gb|DR792421.1|DR792421
EST:     GTGTGGTCACTGCAAGAGTCTTGCACCG                         ACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATT
genomic: GTGTGGTCACTGCAAGAGTCTTGCACCGgttagtacat ... attgtttcagACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATT
EST: gi|4874414|gb|AI673934.1|AI673934
EST:     TGGTGTGGTCACTGCAAGAGTCTTGCACCG                         ACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATT
genomic: TGGTGTGGTCACTGCAAGAGTCTTGCACCGgttagtacat ... attgtttcagACGTATGAGAAGGTGGCTTCTGTTTTCAAGTTGGATGAAGGAGTTGTTATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTGGTCACTGCAAGAGTCTTGCACCGgttagtacatggttctcgtttgagttcttgacacattctattgtggttttactcttgtaagcacccttggcgatcttcatcatttctgatatgtctaatcataatctttattgtttcag

- - - - -  GCAAGA