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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgtgttctgttcgcagtcctgcaatatgtggctatgctgagatatgcttgtggttgctagttttagatgtttaactggtagtatgtttgttct...

Basic information

species Zea mays
transcript GRMZM2G472991_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211277358|gb|FL192926.1|FL192926
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|20300018|gb|BQ162961.1|BQ162961
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|71429251|gb|DR810301.1|DR810301
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|18384971|gb|BM418170.1|BM418170
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATTGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|93016530|gb|EB642050.1|EB642050
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|91056420|gb|EB166838.1|EB166838
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|89106284|gb|DY576501.1|DY576501
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|78112924|gb|DV531318.1|DV531318
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|20299997|gb|BQ162940.1|BQ162940
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|18384009|gb|BM417209.1|BM417209
EST:     CACGAGA-TGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|18383990|gb|BM417190.1|BM417190
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|76014835|gb|DT942005.1|DT942005
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|18384955|gb|BM418154.1|BM418154
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|76014878|gb|DT942048.1|DT942048
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|22489226|gb|BU049149.1|BU049149
EST:     CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT
EST: gi|78120952|gb|DV539336.1|DV539336
EST:     CACGAGATTGTTCCAGCAAAACTTGTCGACGGGATCGCCAGACTGAA                         GCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAAAACAAGCTAGT
genomic: CACGAGATTGTTCCAGCAGAACTTGTCGACAGGATCGCCAGACTGAAgtaagattgt ... atgaattcagGCATGGAGGCACATACAAAGTGCTGAGGAATCTTTTGAAGAACAAGCTAGT